Read data

source(paste0(root.dir, "scripts/myRLib.R"))
funcset <- readLines(paste0(root.dir, "output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/sig_subset.set"))
funcset <- parseFuncSet(funcset)
funcset.names <- names(funcset)
xtyi.files <- strsplit("output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e+00.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p3.0000e-01.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e-01.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p3.0000e-02.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e-02.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p3.0000e-03.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e-03.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p3.0000e-04.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e-04.assoc.logistic", 
    ":")[[1]]
ps <- strsplit("1,0.3,0.1,0.03,0.01,0.003,0.001,0.0003,0.0001", 
    ",")[[1]]
inter.files <- strsplit("output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e+00.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-01.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-01.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-02.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-02.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-03.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-03.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-04.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-04.assoc.logistic", 
    ":")[[1]]
prs.files <- strsplit("../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e+00.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p3.0000e-01.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e-01.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p3.0000e-02.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e-02.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p3.0000e-03.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e-03.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p3.0000e-04.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e-04.txt", 
    ":")[[1]]

Epistasis

for (i in 1:length(xtyi.files)) {
    cat("##", funcset.names[i])
    cat("
")
    cat("
")
    snp.subset <- funcset[[funcset.names[i]]]
    
    # read I ~ SNP
    prs <- read.table(paste0(root.dir, prs.files[i]), header = T)
    prs$sid <- as.character(prs$sid)
    prs.sub <- prs[prs$sid %in% snp.subset, ]
    
    # read others
    xtyi <- read.table(paste0(root.dir, xtyi.files[i]), header = T)
    xtyi$SNP <- as.character(xtyi$SNP)
    yt.xtyi <- xtyi[(xtyi$SNP %in% snp.subset) & (xtyi$SNP %in% 
        prs.sub$sid), ]
    yt.xtyi.xt <- yt.xtyi[yt.xtyi$TEST == "ADD", ]
    yt.xtyi.yi <- yt.xtyi[yt.xtyi$TEST == "PRS", ]
    inter <- read.table(paste0(root.dir, inter.files[i]), header = T)
    inter$SNP <- as.character(inter$SNP)
    inter <- inter[inter$TEST == "ADDxPRS", ]
    yt.inter <- inter[(inter$SNP %in% snp.subset) & (inter$SNP %in% 
        prs.sub$sid), ]
    
    # order all rows
    yt.xtyi.xt <- yt.xtyi.xt[order(yt.xtyi.xt$SNP), ]
    yt.xtyi.yi <- yt.xtyi.yi[order(yt.xtyi.yi$SNP), ]
    yt.inter <- yt.inter[order(yt.inter$SNP), ]
    prs.sub <- prs.sub[order(prs.sub$sid), ]
    
    # check direction
    prs.sub$nt1 <- as.character(prs.sub$nt1)
    yt.xtyi.xt$A1 <- as.character(yt.xtyi.xt$A1)
    yt.inter$A1 <- as.character(yt.inter$A1)
    if (sum(prs.sub$nt1 != yt.xtyi.xt$A1) != 0 | sum(prs.sub$nt1 != 
        yt.inter$A1) != 0) {
        print("Direction does not match. Exit!")
        quit()
    }
    
    yt.xtyi.xt.mean.std <- getMeanStd(yt.xtyi.xt$SNP, yt.xtyi.xt$P, 
        yt.xtyi.xt$OR, "Y~Gi+I (Gi)")
    yt.xtyi.yi.mean.std <- getMeanStd(yt.xtyi.yi$SNP, yt.xtyi.yi$P, 
        yt.xtyi.yi$OR, "Y~Gi+I (I)")
    yt.inter.mean.std <- getMeanStd(yt.inter$SNP, yt.inter$P, 
        yt.inter$OR, "Y~Gi*I")
    prs.sub.mean.std <- data.frame(SNP = prs.sub$sid, Mean = prs.sub$ldpred_beta, 
        Std = 0, Type = "I~Gi")
    
    # create data frame for plot
    df <- rbind(yt.xtyi.xt.mean.std, yt.xtyi.yi.mean.std, prs.sub.mean.std, 
        yt.inter.mean.std)
    ratio <- max(1, nrow(yt.inter)/40)
    cat
    p <- ggplot(df) + geom_point(aes(x = SNP, y = Mean)) + geom_errorbar(aes(x = SNP, 
        ymin = Mean - 1.96 * Std, ymax = Mean + 1.96 * Std), 
        colour = "black", width = 0.1) + geom_hline(yintercept = 0, 
        color = "red") + facet_grid(. ~ Type, scales = "free_x") + 
        coord_flip() + theme(axis.text.x = element_text(angle = 90, 
        hjust = 1))
    p2 <- ggplot(yt.inter) + geom_bar(aes(x = SNP, y = -log10(P)), 
        stat = "identity") + coord_flip() + ggtitle("Interaction P-value")
    subchunkify(p, ratio)
    subchunkify(p2, ratio)
    cat("
")
    inter.plus.gwas.pval <- cbind(yt.inter, yt.xtyi.xt$P)
    colnames(inter.plus.gwas.pval) <- c(colnames(yt.inter), "GWAS.P")
    pander(inter.plus.gwas.pval[order(inter.plus.gwas.pval$P, 
        decreasing = F), ])
    cat("
")
    cat("
")
}

p1.0000e+00

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
81 10 rs5015480 0 T ADDxPRS 4862 1.299 2.47 0.01351 3.105e-05
177 16 rs11075123 0 A ADDxPRS 4862 0.7721 -2.225 0.02611 2.621e-05
87 10 rs7923866 0 T ADDxPRS 4862 1.214 1.827 0.06764 3.892e-05
162 14 rs8012854 0 G ADDxPRS 4862 1.245 1.617 0.1058 4.322e-05
165 15 rs2930291 0 A ADDxPRS 4862 0.8509 -1.495 0.135 5.136e-06
90 10 rs7917983 0 C ADDxPRS 4862 1.152 1.367 0.1716 5.551e-08
111 10 rs12243326 0 C ADDxPRS 4862 0.8724 -1.224 0.221 4.114e-10
45 3 rs440646 0 G ADDxPRS 4862 1.128 1.174 0.2403 5.669e-05
99 10 rs7901695 0 C ADDxPRS 4862 0.8865 -1.106 0.2686 3.839e-12
150 12 rs7972188 0 C ADDxPRS 4862 1.117 1.035 0.3009 1.447e-05
75 10 rs9326506 0 A ADDxPRS 4862 1.108 1.012 0.3114 1.009e-05
105 10 rs4132670 0 A ADDxPRS 4862 0.9058 -0.9099 0.3629 5.308e-12
78 10 rs9422545 0 A ADDxPRS 4862 1.095 0.8948 0.3709 1.202e-05
93 10 rs7901275 0 C ADDxPRS 4862 1.095 0.8812 0.3782 1.313e-07
96 10 rs4074720 0 T ADDxPRS 4862 0.9198 -0.8226 0.4108 1.679e-10
159 12 rs7961581 0 C ADDxPRS 4862 1.086 0.7393 0.4597 6.588e-06
189 16 rs17817288 0 A ADDxPRS 4862 1.071 0.6805 0.4962 4.398e-06
108 10 rs10787472 0 C ADDxPRS 4862 0.939 -0.6127 0.5401 8.773e-11
36 2 rs10931347 0 A ADDxPRS 4862 0.9375 -0.6076 0.5434 2.482e-05
153 12 rs1510937 0 C ADDxPRS 4862 1.064 0.5983 0.5497 5.588e-06
3 1 rs4655595 0 G ADDxPRS 4862 0.9031 -0.5951 0.5518 6.198e-06
51 6 rs10946398 0 C ADDxPRS 4862 0.9398 -0.5905 0.5548 8.688e-05
57 6 rs9460546 0 G ADDxPRS 4862 0.9398 -0.5905 0.5548 8.688e-05
33 2 rs11688935 0 G ADDxPRS 4862 0.9423 -0.5606 0.5751 1.717e-05
114 10 rs7077039 0 C ADDxPRS 4862 0.9496 -0.4989 0.6178 6.382e-12
30 2 rs10929982 0 C ADDxPRS 4862 0.9405 -0.4735 0.6358 1.113e-05
39 2 rs17248501 0 C ADDxPRS 4862 1.041 0.3843 0.7007 6.257e-06
48 3 rs3846119 0 T ADDxPRS 4862 1.082 0.3541 0.7232 3.509e-05
60 6 rs9465871 0 C ADDxPRS 4862 0.9577 -0.3444 0.7306 4.618e-06
129 12 rs11178531 0 A ADDxPRS 4862 0.974 -0.2559 0.798 2.002e-05
168 15 rs2903265 0 A ADDxPRS 4862 0.9713 -0.2512 0.8017 9.313e-06
27 2 rs11693602 0 C ADDxPRS 4862 0.973 -0.2193 0.8265 7.445e-06
12 2 rs4077463 0 A ADDxPRS 4862 0.9734 -0.2164 0.8286 1.325e-05
24 2 rs6718526 0 T ADDxPRS 4862 0.9729 -0.2136 0.8309 3.414e-06
198 16 rs8050136 0 A ADDxPRS 4862 0.9813 -0.1829 0.8549 2.723e-08
141 12 rs2270584 0 A ADDxPRS 4862 1.019 0.1821 0.8555 2.162e-05
69 6 rs10806665 0 A ADDxPRS 4862 1.032 0.1704 0.8647 5.643e-06
9 2 rs12692592 0 G ADDxPRS 4862 0.9818 -0.1496 0.8811 2.007e-05
180 16 rs9939973 0 A ADDxPRS 4862 0.9852 -0.1461 0.8839 2.303e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9852 -0.1461 0.8839 2.303e-07
15 2 rs7593730 0 T ADDxPRS 4862 0.9823 -0.1439 0.8856 1.352e-05
195 16 rs7193144 0 C ADDxPRS 4862 0.9858 -0.1388 0.8896 3.108e-08
120 10 rs10885409 0 C ADDxPRS 4862 0.9884 -0.1132 0.9099 2.154e-10
132 12 rs7132840 0 T ADDxPRS 4862 0.9906 -0.09154 0.9271 1.536e-05
138 12 rs10506626 0 A ADDxPRS 4862 1.009 0.0903 0.928 2.084e-05
63 6 rs7767391 0 C ADDxPRS 4862 0.9913 -0.07045 0.9438 1.329e-05
72 9 rs10817674 0 A ADDxPRS 4862 1.007 0.06992 0.9443 5.71e-05
174 16 rs2099106 0 T ADDxPRS 4862 0.9929 -0.06179 0.9507 1.318e-05
144 12 rs11178648 0 T ADDxPRS 4862 1.006 0.05776 0.9539 3.934e-05
123 10 rs11196208 0 C ADDxPRS 4862 1.006 0.05767 0.954 1.53e-10
204 16 rs9930506 0 G ADDxPRS 4862 0.9954 -0.04489 0.9642 1.171e-06
6 1 rs6691406 0 A ADDxPRS 4862 0.9953 -0.03952 0.9685 3.989e-05
192 16 rs1121980 0 A ADDxPRS 4862 1.001 0.006971 0.9944 3.193e-07

p3.0000e-01

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
81 10 rs5015480 0 T ADDxPRS 4862 1.28 2.468 0.01359 3.126e-05
177 16 rs11075123 0 A ADDxPRS 4862 0.7666 -2.423 0.0154 2.686e-05
87 10 rs7923866 0 T ADDxPRS 4862 1.209 1.888 0.05899 3.9e-05
165 15 rs2930291 0 A ADDxPRS 4862 0.8461 -1.641 0.1008 5.183e-06
162 14 rs8012854 0 G ADDxPRS 4862 1.227 1.595 0.1107 4.417e-05
90 10 rs7917983 0 C ADDxPRS 4862 1.137 1.321 0.1864 8.275e-08
111 10 rs12243326 0 C ADDxPRS 4862 0.8879 -1.132 0.2576 8.308e-10
99 10 rs7901695 0 C ADDxPRS 4862 0.8916 -1.121 0.2623 8.571e-12
150 12 rs7972188 0 C ADDxPRS 4862 1.118 1.1 0.2714 1.332e-05
45 3 rs440646 0 G ADDxPRS 4862 1.092 0.9118 0.3619 5.681e-05
105 10 rs4132670 0 A ADDxPRS 4862 0.9115 -0.9077 0.3641 1.225e-11
93 10 rs7901275 0 C ADDxPRS 4862 1.09 0.8843 0.3765 1.89e-07
96 10 rs4074720 0 T ADDxPRS 4862 0.9258 -0.8074 0.4194 3.283e-10
189 16 rs17817288 0 A ADDxPRS 4862 1.079 0.7887 0.4303 4.552e-06
36 2 rs10931347 0 A ADDxPRS 4862 0.9296 -0.7296 0.4656 2.518e-05
75 10 rs9326506 0 A ADDxPRS 4862 1.072 0.7252 0.4683 1.049e-05
33 2 rs11688935 0 G ADDxPRS 4862 0.9326 -0.6985 0.4848 1.732e-05
159 12 rs7961581 0 C ADDxPRS 4862 1.076 0.6937 0.4879 6.339e-06
153 12 rs1510937 0 C ADDxPRS 4862 1.063 0.6238 0.5327 5.193e-06
78 10 rs9422545 0 A ADDxPRS 4862 1.059 0.5985 0.5495 1.248e-05
108 10 rs10787472 0 C ADDxPRS 4862 0.9484 -0.5501 0.5823 1.712e-10
69 6 rs10806665 0 A ADDxPRS 4862 1.089 0.503 0.615 6.965e-06
3 1 rs4655595 0 G ADDxPRS 4862 0.9224 -0.4971 0.6191 6.069e-06
30 2 rs10929982 0 C ADDxPRS 4862 0.942 -0.4885 0.6252 1.037e-05
204 16 rs9930506 0 G ADDxPRS 4862 0.9549 -0.4761 0.634 1.125e-06
180 16 rs9939973 0 A ADDxPRS 4862 0.9561 -0.4636 0.6429 2.214e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9561 -0.4636 0.6429 2.214e-07
51 6 rs10946398 0 C ADDxPRS 4862 0.9577 -0.4381 0.6613 0.0001094
57 6 rs9460546 0 G ADDxPRS 4862 0.9577 -0.4381 0.6613 0.0001094
198 16 rs8050136 0 A ADDxPRS 4862 0.9622 -0.3923 0.6949 2.762e-08
141 12 rs2270584 0 A ADDxPRS 4862 1.036 0.3659 0.7144 2.186e-05
195 16 rs7193144 0 C ADDxPRS 4862 0.9672 -0.3392 0.7345 3.14e-08
192 16 rs1121980 0 A ADDxPRS 4862 0.9691 -0.3246 0.7455 3.104e-07
114 10 rs7077039 0 C ADDxPRS 4862 0.9712 -0.3004 0.7639 1.323e-11
138 12 rs10506626 0 A ADDxPRS 4862 1.029 0.3002 0.764 2.097e-05
39 2 rs17248501 0 C ADDxPRS 4862 1.03 0.2935 0.7692 5.467e-06
60 6 rs9465871 0 C ADDxPRS 4862 0.9681 -0.273 0.7849 6.12e-06
144 12 rs11178648 0 T ADDxPRS 4862 1.027 0.2719 0.7857 3.967e-05
6 1 rs6691406 0 A ADDxPRS 4862 0.9706 -0.2653 0.7908 4.127e-05
168 15 rs2903265 0 A ADDxPRS 4862 0.9716 -0.2636 0.7921 9.84e-06
12 2 rs4077463 0 A ADDxPRS 4862 0.9722 -0.2408 0.8097 1.254e-05
27 2 rs11693602 0 C ADDxPRS 4862 0.9722 -0.2405 0.8099 7.095e-06
24 2 rs6718526 0 T ADDxPRS 4862 0.9739 -0.2182 0.8273 3.213e-06
123 10 rs11196208 0 C ADDxPRS 4862 1.021 0.2176 0.8277 3.018e-10
132 12 rs7132840 0 T ADDxPRS 4862 1.017 0.1747 0.8613 1.529e-05
15 2 rs7593730 0 T ADDxPRS 4862 0.9806 -0.167 0.8674 1.282e-05
48 3 rs3846119 0 T ADDxPRS 4862 1.029 0.1374 0.8907 3.737e-05
72 9 rs10817674 0 A ADDxPRS 4862 0.987 -0.1302 0.8964 5.648e-05
9 2 rs12692592 0 G ADDxPRS 4862 0.9859 -0.1229 0.9022 1.908e-05
174 16 rs2099106 0 T ADDxPRS 4862 0.991 -0.08292 0.9339 1.43e-05
120 10 rs10885409 0 C ADDxPRS 4862 1.008 0.08186 0.9348 4.288e-10
63 6 rs7767391 0 C ADDxPRS 4862 1.002 0.01932 0.9846 1.734e-05
129 12 rs11178531 0 A ADDxPRS 4862 1 0.001923 0.9985 1.991e-05

p1.0000e-01

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
177 16 rs11075123 0 A ADDxPRS 4862 0.8009 -2.508 0.01214 2.872e-05
81 10 rs5015480 0 T ADDxPRS 4862 1.188 2.136 0.03269 3.287e-05
165 15 rs2930291 0 A ADDxPRS 4862 0.8681 -1.717 0.08598 5.338e-06
87 10 rs7923866 0 T ADDxPRS 4862 1.143 1.641 0.1008 4.083e-05
162 14 rs8012854 0 G ADDxPRS 4862 1.146 1.307 0.1913 4.528e-05
150 12 rs7972188 0 C ADDxPRS 4862 1.11 1.28 0.2007 1.117e-05
90 10 rs7917983 0 C ADDxPRS 4862 1.095 1.16 0.2459 1.274e-07
99 10 rs7901695 0 C ADDxPRS 4862 0.919 -1.025 0.3054 1.963e-11
204 16 rs9930506 0 G ADDxPRS 4862 0.9252 -0.9903 0.322 1.1e-06
111 10 rs12243326 0 C ADDxPRS 4862 0.9267 -0.8981 0.3691 1.752e-09
69 6 rs10806665 0 A ADDxPRS 4862 1.127 0.881 0.3783 1.021e-05
180 16 rs9939973 0 A ADDxPRS 4862 0.9349 -0.8515 0.3945 2.218e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9349 -0.8515 0.3945 2.218e-07
105 10 rs4132670 0 A ADDxPRS 4862 0.9343 -0.8264 0.4086 2.917e-11
93 10 rs7901275 0 C ADDxPRS 4862 1.065 0.8052 0.4207 2.79e-07
36 2 rs10931347 0 A ADDxPRS 4862 0.9386 -0.7745 0.4386 2.711e-05
33 2 rs11688935 0 G ADDxPRS 4862 0.9389 -0.7715 0.4404 1.85e-05
153 12 rs1510937 0 C ADDxPRS 4862 1.063 0.7712 0.4406 4.425e-06
192 16 rs1121980 0 A ADDxPRS 4862 0.9424 -0.752 0.452 3.157e-07
96 10 rs4074720 0 T ADDxPRS 4862 0.9459 -0.7188 0.4723 6.463e-10
189 16 rs17817288 0 A ADDxPRS 4862 1.056 0.6914 0.4893 5.031e-06
141 12 rs2270584 0 A ADDxPRS 4862 1.046 0.5795 0.5623 2.192e-05
138 12 rs10506626 0 A ADDxPRS 4862 1.045 0.5643 0.5725 2.081e-05
198 16 rs8050136 0 A ADDxPRS 4862 0.956 -0.5623 0.5739 2.93e-08
6 1 rs6691406 0 A ADDxPRS 4862 0.951 -0.5548 0.579 4.478e-05
144 12 rs11178648 0 T ADDxPRS 4862 1.043 0.5371 0.5912 3.978e-05
132 12 rs7132840 0 T ADDxPRS 4862 1.041 0.5099 0.6101 1.49e-05
30 2 rs10929982 0 C ADDxPRS 4862 0.9506 -0.5085 0.6111 9.336e-06
195 16 rs7193144 0 C ADDxPRS 4862 0.9605 -0.5034 0.6147 3.311e-08
159 12 rs7961581 0 C ADDxPRS 4862 1.042 0.4874 0.626 5.721e-06
108 10 rs10787472 0 C ADDxPRS 4862 0.9657 -0.4493 0.6532 3.387e-10
45 3 rs440646 0 G ADDxPRS 4862 1.031 0.388 0.698 5.367e-05
123 10 rs11196208 0 C ADDxPRS 4862 1.029 0.3726 0.7094 6.081e-10
129 12 rs11178531 0 A ADDxPRS 4862 1.027 0.3324 0.7396 1.932e-05
3 1 rs4655595 0 G ADDxPRS 4862 0.9595 -0.3137 0.7537 5.834e-06
12 2 rs4077463 0 A ADDxPRS 4862 0.9722 -0.296 0.7672 1.133e-05
120 10 rs10885409 0 C ADDxPRS 4862 1.023 0.293 0.7696 8.745e-10
27 2 rs11693602 0 C ADDxPRS 4862 0.9728 -0.2901 0.7717 6.342e-06
72 9 rs10817674 0 A ADDxPRS 4862 0.9767 -0.2882 0.7732 5.258e-05
24 2 rs6718526 0 T ADDxPRS 4862 0.9744 -0.2617 0.7936 2.889e-06
60 6 rs9465871 0 C ADDxPRS 4862 0.975 -0.2615 0.7937 7.876e-06
48 3 rs3846119 0 T ADDxPRS 4862 0.9601 -0.2473 0.8047 3.911e-05
15 2 rs7593730 0 T ADDxPRS 4862 0.9786 -0.2279 0.8197 1.155e-05
75 10 rs9326506 0 A ADDxPRS 4862 1.018 0.2236 0.823 1.05e-05
174 16 rs2099106 0 T ADDxPRS 4862 0.9817 -0.2119 0.8322 1.662e-05
168 15 rs2903265 0 A ADDxPRS 4862 0.9844 -0.1767 0.8598 1.09e-05
51 6 rs10946398 0 C ADDxPRS 4862 0.9869 -0.1653 0.8687 0.0001345
57 6 rs9460546 0 G ADDxPRS 4862 0.9869 -0.1653 0.8687 0.0001345
9 2 rs12692592 0 G ADDxPRS 4862 0.9896 -0.1116 0.9112 1.73e-05
78 10 rs9422545 0 A ADDxPRS 4862 1.008 0.09958 0.9207 1.253e-05
63 6 rs7767391 0 C ADDxPRS 4862 1.005 0.05208 0.9585 2.185e-05
114 10 rs7077039 0 C ADDxPRS 4862 0.998 -0.0253 0.9798 2.723e-11
39 2 rs17248501 0 C ADDxPRS 4862 0.9988 -0.01534 0.9878 5.22e-06

p3.0000e-02

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
177 16 rs11075123 0 A ADDxPRS 4862 0.8583 -2.291 0.02196 2.902e-05
165 15 rs2930291 0 A ADDxPRS 4862 0.9026 -1.648 0.09931 5.58e-06
81 10 rs5015480 0 T ADDxPRS 4862 1.095 1.485 0.1376 3.435e-05
150 12 rs7972188 0 C ADDxPRS 4862 1.089 1.392 0.1641 9.576e-06
204 16 rs9930506 0 G ADDxPRS 4862 0.9321 -1.19 0.234 1.154e-06
87 10 rs7923866 0 T ADDxPRS 4862 1.071 1.114 0.2654 4.279e-05
69 6 rs10806665 0 A ADDxPRS 4862 1.108 0.9988 0.3179 1.295e-05
180 16 rs9939973 0 A ADDxPRS 4862 0.9437 -0.9679 0.3331 2.425e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9437 -0.9679 0.3331 2.425e-07
153 12 rs1510937 0 C ADDxPRS 4862 1.057 0.9195 0.3578 3.851e-06
192 16 rs1121980 0 A ADDxPRS 4862 0.9468 -0.9143 0.3606 3.468e-07
90 10 rs7917983 0 C ADDxPRS 4862 1.053 0.8728 0.3828 1.264e-07
99 10 rs7901695 0 C ADDxPRS 4862 0.9489 -0.845 0.3981 1.665e-11
138 12 rs10506626 0 A ADDxPRS 4862 1.049 0.8099 0.418 1.987e-05
33 2 rs11688935 0 G ADDxPRS 4862 0.951 -0.7991 0.4242 2.049e-05
132 12 rs7132840 0 T ADDxPRS 4862 1.048 0.7839 0.4331 1.396e-05
144 12 rs11178648 0 T ADDxPRS 4862 1.047 0.7794 0.4357 3.843e-05
141 12 rs2270584 0 A ADDxPRS 4862 1.046 0.7742 0.4388 2.112e-05
36 2 rs10931347 0 A ADDxPRS 4862 0.9526 -0.7719 0.4402 3.015e-05
162 14 rs8012854 0 G ADDxPRS 4862 1.062 0.7667 0.4433 4.432e-05
105 10 rs4132670 0 A ADDxPRS 4862 0.9577 -0.6969 0.4859 2.474e-11
6 1 rs6691406 0 A ADDxPRS 4862 0.955 -0.674 0.5003 4.85e-05
111 10 rs12243326 0 C ADDxPRS 4862 0.9602 -0.6345 0.5257 1.582e-09
129 12 rs11178531 0 A ADDxPRS 4862 1.037 0.6194 0.5357 1.803e-05
93 10 rs7901275 0 C ADDxPRS 4862 1.037 0.6192 0.5358 2.743e-07
96 10 rs4074720 0 T ADDxPRS 4862 0.9689 -0.5362 0.5918 5.366e-10
48 3 rs3846119 0 T ADDxPRS 4862 0.9366 -0.5342 0.5932 3.94e-05
198 16 rs8050136 0 A ADDxPRS 4862 0.9703 -0.4994 0.6175 3.178e-08
123 10 rs11196208 0 C ADDxPRS 4862 1.028 0.4692 0.6389 5.039e-10
30 2 rs10929982 0 C ADDxPRS 4862 0.9673 -0.438 0.6614 8.588e-06
120 10 rs10885409 0 C ADDxPRS 4862 1.026 0.4368 0.6623 7.315e-10
195 16 rs7193144 0 C ADDxPRS 4862 0.9741 -0.4332 0.6649 3.579e-08
174 16 rs2099106 0 T ADDxPRS 4862 0.975 -0.3871 0.6987 1.803e-05
39 2 rs17248501 0 C ADDxPRS 4862 0.9807 -0.3229 0.7468 5.988e-06
78 10 rs9422545 0 A ADDxPRS 4862 0.9815 -0.3164 0.7517 1.148e-05
189 16 rs17817288 0 A ADDxPRS 4862 1.019 0.3068 0.759 5.831e-06
12 2 rs4077463 0 A ADDxPRS 4862 0.9786 -0.2985 0.7653 1.019e-05
108 10 rs10787472 0 C ADDxPRS 4862 0.9827 -0.2956 0.7675 2.791e-10
27 2 rs11693602 0 C ADDxPRS 4862 0.9809 -0.2655 0.7906 5.573e-06
72 9 rs10817674 0 A ADDxPRS 4862 0.9838 -0.2615 0.7937 4.748e-05
24 2 rs6718526 0 T ADDxPRS 4862 0.9805 -0.2597 0.7951 2.617e-06
15 2 rs7593730 0 T ADDxPRS 4862 0.9828 -0.2395 0.8107 1.033e-05
114 10 rs7077039 0 C ADDxPRS 4862 1.013 0.2161 0.8289 2.134e-11
75 10 rs9326506 0 A ADDxPRS 4862 0.9875 -0.2131 0.8312 9.59e-06
159 12 rs7961581 0 C ADDxPRS 4862 1.012 0.1944 0.8458 5.166e-06
60 6 rs9465871 0 C ADDxPRS 4862 0.986 -0.1919 0.8478 6.516e-06
51 6 rs10946398 0 C ADDxPRS 4862 1.011 0.1744 0.8616 0.0001107
57 6 rs9460546 0 G ADDxPRS 4862 1.011 0.1744 0.8616 0.0001107
45 3 rs440646 0 G ADDxPRS 4862 0.9904 -0.1638 0.8699 5.006e-05
63 6 rs7767391 0 C ADDxPRS 4862 1.007 0.1025 0.9183 1.813e-05
9 2 rs12692592 0 G ADDxPRS 4862 0.9953 -0.0657 0.9476 1.56e-05
3 1 rs4655595 0 G ADDxPRS 4862 0.9942 -0.05858 0.9533 5.741e-06
168 15 rs2903265 0 A ADDxPRS 4862 0.9975 -0.03722 0.9703 1.156e-05

p1.0000e-02

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
177 16 rs11075123 0 A ADDxPRS 4862 0.8847 -1.956 0.0505 2.762e-05
165 15 rs2930291 0 A ADDxPRS 4862 0.9109 -1.607 0.1081 5.83e-06
150 12 rs7972188 0 C ADDxPRS 4862 1.071 1.193 0.2327 8.978e-06
204 16 rs9930506 0 G ADDxPRS 4862 0.9406 -1.11 0.267 1.231e-06
81 10 rs5015480 0 T ADDxPRS 4862 1.065 1.109 0.2672 3.329e-05
132 12 rs7132840 0 T ADDxPRS 4862 1.064 1.109 0.2676 1.299e-05
138 12 rs10506626 0 A ADDxPRS 4862 1.061 1.073 0.2831 1.855e-05
144 12 rs11178648 0 T ADDxPRS 4862 1.058 1.028 0.304 3.598e-05
141 12 rs2270584 0 A ADDxPRS 4862 1.057 1.013 0.311 1.972e-05
129 12 rs11178531 0 A ADDxPRS 4862 1.054 0.954 0.3401 1.673e-05
33 2 rs11688935 0 G ADDxPRS 4862 0.9474 -0.9091 0.3633 2.142e-05
87 10 rs7923866 0 T ADDxPRS 4862 1.052 0.8854 0.3759 4.17e-05
36 2 rs10931347 0 A ADDxPRS 4862 0.9498 -0.8656 0.3867 3.153e-05
69 6 rs10806665 0 A ADDxPRS 4862 1.085 0.8503 0.3952 1.321e-05
99 10 rs7901695 0 C ADDxPRS 4862 0.9523 -0.8404 0.4007 1.1e-11
153 12 rs1510937 0 C ADDxPRS 4862 1.048 0.8279 0.4077 3.604e-06
180 16 rs9939973 0 A ADDxPRS 4862 0.9573 -0.7776 0.4368 2.622e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9573 -0.7776 0.4368 2.622e-07
192 16 rs1121980 0 A ADDxPRS 4862 0.9584 -0.7587 0.448 3.742e-07
78 10 rs9422545 0 A ADDxPRS 4862 0.9604 -0.7243 0.4689 1.058e-05
6 1 rs6691406 0 A ADDxPRS 4862 0.9554 -0.7142 0.4751 5.009e-05
105 10 rs4132670 0 A ADDxPRS 4862 0.9593 -0.7141 0.4752 1.608e-11
75 10 rs9326506 0 A ADDxPRS 4862 0.9655 -0.632 0.5274 8.816e-06
111 10 rs12243326 0 C ADDxPRS 4862 0.9662 -0.5733 0.5665 1.148e-09
174 16 rs2099106 0 T ADDxPRS 4862 0.9663 -0.5599 0.5755 1.785e-05
48 3 rs3846119 0 T ADDxPRS 4862 0.9404 -0.5332 0.5939 4.097e-05
72 9 rs10817674 0 A ADDxPRS 4862 0.9692 -0.5323 0.5945 4.439e-05
96 10 rs4074720 0 T ADDxPRS 4862 0.9718 -0.514 0.6072 3.674e-10
90 10 rs7917983 0 C ADDxPRS 4862 1.026 0.4698 0.6385 1.123e-07
45 3 rs440646 0 G ADDxPRS 4862 0.9743 -0.4689 0.6392 5.024e-05
123 10 rs11196208 0 C ADDxPRS 4862 1.024 0.4257 0.6704 3.408e-10
39 2 rs17248501 0 C ADDxPRS 4862 0.9764 -0.4199 0.6745 6.625e-06
120 10 rs10885409 0 C ADDxPRS 4862 1.024 0.4161 0.6773 4.97e-10
51 6 rs10946398 0 C ADDxPRS 4862 1.023 0.3949 0.6929 8.376e-05
57 6 rs9460546 0 G ADDxPRS 4862 1.023 0.3949 0.6929 8.376e-05
93 10 rs7901275 0 C ADDxPRS 4862 1.02 0.3581 0.7203 2.46e-07
162 14 rs8012854 0 G ADDxPRS 4862 1.025 0.3365 0.7365 4.277e-05
108 10 rs10787472 0 C ADDxPRS 4862 0.982 -0.326 0.7444 1.893e-10
198 16 rs8050136 0 A ADDxPRS 4862 0.9843 -0.2813 0.7785 3.319e-08
114 10 rs7077039 0 C ADDxPRS 4862 1.012 0.2168 0.8284 1.366e-11
195 16 rs7193144 0 C ADDxPRS 4862 0.9883 -0.2082 0.8351 3.745e-08
9 2 rs12692592 0 G ADDxPRS 4862 1.014 0.2018 0.8401 1.452e-05
63 6 rs7767391 0 C ADDxPRS 4862 1.012 0.172 0.8634 1.393e-05
30 2 rs10929982 0 C ADDxPRS 4862 0.9888 -0.1568 0.8754 8.226e-06
189 16 rs17817288 0 A ADDxPRS 4862 0.9935 -0.1153 0.9082 6.43e-06
168 15 rs2903265 0 A ADDxPRS 4862 1.006 0.09994 0.9204 1.151e-05
60 6 rs9465871 0 C ADDxPRS 4862 0.9965 -0.05056 0.9597 4.923e-06
12 2 rs4077463 0 A ADDxPRS 4862 0.9968 -0.04741 0.9622 9.461e-06
24 2 rs6718526 0 T ADDxPRS 4862 0.9968 -0.04506 0.9641 2.472e-06
3 1 rs4655595 0 G ADDxPRS 4862 1.003 0.03702 0.9705 5.647e-06
27 2 rs11693602 0 C ADDxPRS 4862 1.002 0.02798 0.9777 5.108e-06
159 12 rs7961581 0 C ADDxPRS 4862 1.001 0.0211 0.9832 4.905e-06
15 2 rs7593730 0 T ADDxPRS 4862 1.001 0.01025 0.9918 9.562e-06

p3.0000e-03

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
177 16 rs11075123 0 A ADDxPRS 4862 0.9016 -1.518 0.1289 2.552e-05
165 15 rs2930291 0 A ADDxPRS 4862 0.9094 -1.51 0.1311 6.051e-06
132 12 rs7132840 0 T ADDxPRS 4862 1.094 1.485 0.1376 1.202e-05
129 12 rs11178531 0 A ADDxPRS 4862 1.085 1.346 0.1783 1.547e-05
138 12 rs10506626 0 A ADDxPRS 4862 1.083 1.343 0.1792 1.718e-05
144 12 rs11178648 0 T ADDxPRS 4862 1.079 1.28 0.2007 3.329e-05
141 12 rs2270584 0 A ADDxPRS 4862 1.078 1.272 0.2034 1.821e-05
78 10 rs9422545 0 A ADDxPRS 4862 0.93 -1.193 0.2328 9.736e-06
72 9 rs10817674 0 A ADDxPRS 4862 0.9312 -1.117 0.264 4.234e-05
75 10 rs9326506 0 A ADDxPRS 4862 0.9354 -1.1 0.2713 8.102e-06
81 10 rs5015480 0 T ADDxPRS 4862 1.062 0.9776 0.3283 3.119e-05
99 10 rs7901695 0 C ADDxPRS 4862 0.9411 -0.9652 0.3345 6.845e-12
87 10 rs7923866 0 T ADDxPRS 4862 1.062 0.9605 0.3368 3.914e-05
33 2 rs11688935 0 G ADDxPRS 4862 0.9398 -0.9584 0.3379 2.15e-05
204 16 rs9930506 0 G ADDxPRS 4862 0.9457 -0.9304 0.3521 1.289e-06
36 2 rs10931347 0 A ADDxPRS 4862 0.9422 -0.9172 0.359 3.162e-05
105 10 rs4132670 0 A ADDxPRS 4862 0.9486 -0.8367 0.4028 9.821e-12
69 6 rs10806665 0 A ADDxPRS 4862 1.077 0.7066 0.4798 1.292e-05
45 3 rs440646 0 G ADDxPRS 4862 0.9586 -0.6909 0.4896 5.059e-05
6 1 rs6691406 0 A ADDxPRS 4862 0.9535 -0.6895 0.4905 5.025e-05
111 10 rs12243326 0 C ADDxPRS 4862 0.9584 -0.6575 0.5108 7.903e-10
150 12 rs7972188 0 C ADDxPRS 4862 1.041 0.6473 0.5174 8.833e-06
9 2 rs12692592 0 G ADDxPRS 4862 1.047 0.6273 0.5305 1.381e-05
174 16 rs2099106 0 T ADDxPRS 4862 0.9603 -0.6105 0.5415 1.709e-05
96 10 rs4074720 0 T ADDxPRS 4862 0.9664 -0.5636 0.573 2.439e-10
51 6 rs10946398 0 C ADDxPRS 4862 1.031 0.5034 0.6147 6.315e-05
57 6 rs9460546 0 G ADDxPRS 4862 1.031 0.5034 0.6147 6.315e-05
27 2 rs11693602 0 C ADDxPRS 4862 1.037 0.4828 0.6292 4.817e-06
153 12 rs1510937 0 C ADDxPRS 4862 1.03 0.4786 0.6322 3.519e-06
192 16 rs1121980 0 A ADDxPRS 4862 0.9725 -0.4592 0.6461 3.917e-07
108 10 rs10787472 0 C ADDxPRS 4862 0.9725 -0.4574 0.6474 1.239e-10
180 16 rs9939973 0 A ADDxPRS 4862 0.9734 -0.4432 0.6576 2.752e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9734 -0.4432 0.6576 2.752e-07
15 2 rs7593730 0 T ADDxPRS 4862 1.034 0.4414 0.6589 9.081e-06
12 2 rs4077463 0 A ADDxPRS 4862 1.029 0.38 0.7039 8.999e-06
189 16 rs17817288 0 A ADDxPRS 4862 0.9772 -0.376 0.7069 6.852e-06
48 3 rs3846119 0 T ADDxPRS 4862 0.9565 -0.3511 0.7255 4.326e-05
24 2 rs6718526 0 T ADDxPRS 4862 1.026 0.3324 0.7396 2.406e-06
120 10 rs10885409 0 C ADDxPRS 4862 1.02 0.3277 0.7432 3.256e-10
123 10 rs11196208 0 C ADDxPRS 4862 1.019 0.3034 0.7616 2.224e-10
168 15 rs2903265 0 A ADDxPRS 4862 1.018 0.2637 0.792 1.127e-05
30 2 rs10929982 0 C ADDxPRS 4862 1.02 0.2522 0.8009 8.046e-06
39 2 rs17248501 0 C ADDxPRS 4862 0.9858 -0.2307 0.8175 7.13e-06
63 6 rs7767391 0 C ADDxPRS 4862 1.016 0.2169 0.8282 1.077e-05
3 1 rs4655595 0 G ADDxPRS 4862 0.9874 -0.1252 0.9003 5.503e-06
60 6 rs9465871 0 C ADDxPRS 4862 1.007 0.09666 0.923 3.74e-06
114 10 rs7077039 0 C ADDxPRS 4862 1.004 0.05971 0.9524 8.425e-12
93 10 rs7901275 0 C ADDxPRS 4862 1.003 0.05569 0.9556 2.194e-07
195 16 rs7193144 0 C ADDxPRS 4862 1.002 0.04062 0.9676 3.772e-08
90 10 rs7917983 0 C ADDxPRS 4862 0.9977 -0.03895 0.9689 9.853e-08
159 12 rs7961581 0 C ADDxPRS 4862 1.002 0.03649 0.9709 4.824e-06
162 14 rs8012854 0 G ADDxPRS 4862 1.002 0.023 0.9816 4.133e-05
198 16 rs8050136 0 A ADDxPRS 4862 0.9988 -0.01957 0.9844 3.321e-08

p1.0000e-03

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
132 12 rs7132840 0 T ADDxPRS 4862 1.116 1.611 0.1072 1.141e-05
72 9 rs10817674 0 A ADDxPRS 4862 0.8985 -1.5 0.1336 4.145e-05
129 12 rs11178531 0 A ADDxPRS 4862 1.107 1.492 0.1357 1.47e-05
78 10 rs9422545 0 A ADDxPRS 4862 0.9033 -1.484 0.1378 9.255e-06
138 12 rs10506626 0 A ADDxPRS 4862 1.098 1.399 0.1618 1.634e-05
75 10 rs9326506 0 A ADDxPRS 4862 0.9094 -1.388 0.1653 7.703e-06
165 15 rs2930291 0 A ADDxPRS 4862 0.9081 -1.365 0.1723 6.193e-06
144 12 rs11178648 0 T ADDxPRS 4862 1.094 1.342 0.1796 3.167e-05
141 12 rs2270584 0 A ADDxPRS 4862 1.092 1.328 0.1841 1.729e-05
177 16 rs11075123 0 A ADDxPRS 4862 0.9153 -1.156 0.2477 2.415e-05
87 10 rs7923866 0 T ADDxPRS 4862 1.079 1.092 0.2748 3.795e-05
9 2 rs12692592 0 G ADDxPRS 4862 1.087 1.006 0.3142 1.357e-05
99 10 rs7901695 0 C ADDxPRS 4862 0.9323 -0.9946 0.3199 4.678e-12
33 2 rs11688935 0 G ADDxPRS 4862 0.9325 -0.9612 0.3365 2.146e-05
81 10 rs5015480 0 T ADDxPRS 4862 1.067 0.9453 0.3445 3.047e-05
36 2 rs10931347 0 A ADDxPRS 4862 0.9345 -0.9291 0.3529 3.151e-05
105 10 rs4132670 0 A ADDxPRS 4862 0.9398 -0.88 0.3788 6.637e-12
27 2 rs11693602 0 C ADDxPRS 4862 1.076 0.8691 0.3848 4.713e-06
69 6 rs10806665 0 A ADDxPRS 4862 1.104 0.8412 0.4002 1.269e-05
45 3 rs440646 0 G ADDxPRS 4862 0.9441 -0.8301 0.4065 5.1e-05
15 2 rs7593730 0 T ADDxPRS 4862 1.072 0.8283 0.4075 8.917e-06
204 16 rs9930506 0 G ADDxPRS 4862 0.9479 -0.7944 0.427 1.329e-06
12 2 rs4077463 0 A ADDxPRS 4862 1.066 0.761 0.4467 8.842e-06
111 10 rs12243326 0 C ADDxPRS 4862 0.9479 -0.7433 0.4573 5.703e-10
6 1 rs6691406 0 A ADDxPRS 4862 0.9496 -0.6673 0.5046 5.042e-05
24 2 rs6718526 0 T ADDxPRS 4862 1.06 0.6553 0.5123 2.401e-06
96 10 rs4074720 0 T ADDxPRS 4862 0.959 -0.6164 0.5377 1.761e-10
30 2 rs10929982 0 C ADDxPRS 4862 1.051 0.5587 0.5763 8.022e-06
108 10 rs10787472 0 C ADDxPRS 4862 0.9664 -0.5006 0.6167 8.825e-11
174 16 rs2099106 0 T ADDxPRS 4862 0.9636 -0.4977 0.6187 1.647e-05
51 6 rs10946398 0 C ADDxPRS 4862 1.031 0.4444 0.6567 4.981e-05
57 6 rs9460546 0 G ADDxPRS 4862 1.031 0.4444 0.6567 4.981e-05
90 10 rs7917983 0 C ADDxPRS 4862 0.9708 -0.4368 0.6622 8.575e-08
189 16 rs17817288 0 A ADDxPRS 4862 0.9706 -0.4342 0.6642 7.059e-06
168 15 rs2903265 0 A ADDxPRS 4862 1.025 0.3208 0.7483 1.108e-05
3 1 rs4655595 0 G ADDxPRS 4862 0.9666 -0.3016 0.7629 5.344e-06
120 10 rs10885409 0 C ADDxPRS 4862 1.018 0.267 0.7894 2.322e-10
39 2 rs17248501 0 C ADDxPRS 4862 1.017 0.2415 0.8091 7.544e-06
123 10 rs11196208 0 C ADDxPRS 4862 1.016 0.2355 0.8139 1.582e-10
93 10 rs7901275 0 C ADDxPRS 4862 0.985 -0.2236 0.823 1.938e-07
192 16 rs1121980 0 A ADDxPRS 4862 0.9854 -0.2165 0.8286 4.024e-07
153 12 rs1510937 0 C ADDxPRS 4862 1.013 0.1964 0.8443 3.501e-06
195 16 rs7193144 0 C ADDxPRS 4862 1.013 0.1907 0.8488 3.748e-08
150 12 rs7972188 0 C ADDxPRS 4862 1.013 0.1873 0.8514 8.832e-06
180 16 rs9939973 0 A ADDxPRS 4862 0.9877 -0.1807 0.8566 2.836e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9877 -0.1807 0.8566 2.836e-07
63 6 rs7767391 0 C ADDxPRS 4862 1.014 0.1695 0.8654 8.82e-06
198 16 rs8050136 0 A ADDxPRS 4862 1.011 0.1563 0.8758 3.281e-08
159 12 rs7961581 0 C ADDxPRS 4862 1.01 0.1351 0.8926 4.748e-06
60 6 rs9465871 0 C ADDxPRS 4862 1.01 0.122 0.9029 3.032e-06
48 3 rs3846119 0 T ADDxPRS 4862 0.9831 -0.1185 0.9057 4.47e-05
162 14 rs8012854 0 G ADDxPRS 4862 0.9914 -0.09712 0.9226 4.029e-05
114 10 rs7077039 0 C ADDxPRS 4862 0.9979 -0.03096 0.9753 5.784e-12

p3.0000e-04

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
78 10 rs9422545 0 A ADDxPRS 4862 0.8801 -1.667 0.09546 8.944e-06
132 12 rs7132840 0 T ADDxPRS 4862 1.135 1.66 0.09687 1.107e-05
72 9 rs10817674 0 A ADDxPRS 4862 0.8771 -1.645 0.09998 4.171e-05
129 12 rs11178531 0 A ADDxPRS 4862 1.127 1.574 0.1155 1.429e-05
75 10 rs9326506 0 A ADDxPRS 4862 0.8866 -1.573 0.1158 7.446e-06
138 12 rs10506626 0 A ADDxPRS 4862 1.107 1.361 0.1736 1.599e-05
165 15 rs2930291 0 A ADDxPRS 4862 0.8987 -1.346 0.1782 6.305e-06
144 12 rs11178648 0 T ADDxPRS 4862 1.103 1.32 0.187 3.098e-05
141 12 rs2270584 0 A ADDxPRS 4862 1.101 1.294 0.1957 1.689e-05
87 10 rs7923866 0 T ADDxPRS 4862 1.105 1.276 0.2018 3.742e-05
9 2 rs12692592 0 G ADDxPRS 4862 1.119 1.207 0.2276 1.329e-05
69 6 rs10806665 0 A ADDxPRS 4862 1.166 1.166 0.2437 1.264e-05
177 16 rs11075123 0 A ADDxPRS 4862 0.9111 -1.092 0.2748 2.285e-05
27 2 rs11693602 0 C ADDxPRS 4862 1.107 1.071 0.2844 4.617e-06
15 2 rs7593730 0 T ADDxPRS 4862 1.104 1.036 0.3001 8.741e-06
81 10 rs5015480 0 T ADDxPRS 4862 1.079 0.9873 0.3235 3.041e-05
12 2 rs4077463 0 A ADDxPRS 4862 1.096 0.9632 0.3355 8.665e-06
33 2 rs11688935 0 G ADDxPRS 4862 0.9265 -0.9433 0.3455 2.157e-05
36 2 rs10931347 0 A ADDxPRS 4862 0.9299 -0.8965 0.37 3.167e-05
45 3 rs440646 0 G ADDxPRS 4862 0.9328 -0.895 0.3708 5.198e-05
24 2 rs6718526 0 T ADDxPRS 4862 1.088 0.8474 0.3968 2.364e-06
99 10 rs7901695 0 C ADDxPRS 4862 0.9374 -0.8214 0.4114 4.154e-12
90 10 rs7917983 0 C ADDxPRS 4862 0.945 -0.7436 0.4571 7.841e-08
204 16 rs9930506 0 G ADDxPRS 4862 0.9458 -0.7409 0.4587 1.356e-06
30 2 rs10929982 0 C ADDxPRS 4862 1.074 0.7214 0.4707 7.881e-06
105 10 rs4132670 0 A ADDxPRS 4862 0.9454 -0.7132 0.4757 5.889e-12
39 2 rs17248501 0 C ADDxPRS 4862 1.054 0.6797 0.4967 7.713e-06
111 10 rs12243326 0 C ADDxPRS 4862 0.9493 -0.6515 0.5147 5.084e-10
6 1 rs6691406 0 A ADDxPRS 4862 0.9491 -0.601 0.5478 5.102e-05
96 10 rs4074720 0 T ADDxPRS 4862 0.959 -0.551 0.5817 1.534e-10
51 6 rs10946398 0 C ADDxPRS 4862 1.038 0.4756 0.6343 4.118e-05
57 6 rs9460546 0 G ADDxPRS 4862 1.038 0.4756 0.6343 4.118e-05
93 10 rs7901275 0 C ADDxPRS 4862 0.9657 -0.4591 0.6461 1.774e-07
174 16 rs2099106 0 T ADDxPRS 4862 0.9648 -0.4326 0.6653 1.602e-05
108 10 rs10787472 0 C ADDxPRS 4862 0.971 -0.3858 0.6997 7.68e-11
150 12 rs7972188 0 C ADDxPRS 4862 0.971 -0.3776 0.7057 8.855e-06
60 6 rs9465871 0 C ADDxPRS 4862 1.035 0.3684 0.7126 2.64e-06
189 16 rs17817288 0 A ADDxPRS 4862 0.9737 -0.3492 0.7269 7.162e-06
63 6 rs7767391 0 C ADDxPRS 4862 1.033 0.3483 0.7276 7.728e-06
120 10 rs10885409 0 C ADDxPRS 4862 1.026 0.3323 0.7397 2.028e-10
123 10 rs11196208 0 C ADDxPRS 4862 1.022 0.2915 0.7707 1.381e-10
3 1 rs4655595 0 G ADDxPRS 4862 0.9641 -0.2902 0.7716 5.192e-06
48 3 rs3846119 0 T ADDxPRS 4862 1.041 0.2466 0.8053 4.633e-05
195 16 rs7193144 0 C ADDxPRS 4862 1.018 0.2381 0.8118 3.715e-08
198 16 rs8050136 0 A ADDxPRS 4862 1.017 0.2182 0.8273 3.248e-08
159 12 rs7961581 0 C ADDxPRS 4862 1.017 0.2099 0.8337 4.719e-06
153 12 rs1510937 0 C ADDxPRS 4862 0.9853 -0.1944 0.8458 3.512e-06
168 15 rs2903265 0 A ADDxPRS 4862 1.015 0.1795 0.8576 1.086e-05
162 14 rs8012854 0 G ADDxPRS 4862 0.9891 -0.1105 0.912 3.989e-05
192 16 rs1121980 0 A ADDxPRS 4862 0.9929 -0.09425 0.9249 4.081e-07
180 16 rs9939973 0 A ADDxPRS 4862 0.9951 -0.06445 0.9486 2.883e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9951 -0.06445 0.9486 2.883e-07
114 10 rs7077039 0 C ADDxPRS 4862 1.004 0.05485 0.9563 5.085e-12

p1.0000e-04

  CHR SNP BP A1 TEST NMISS OR STAT P GWAS.P
78 10 rs9422545 0 A ADDxPRS 4862 0.866 -1.759 0.0785 8.78e-06
75 10 rs9326506 0 A ADDxPRS 4862 0.8723 -1.673 0.09431 7.311e-06
72 9 rs10817674 0 A ADDxPRS 4862 0.8684 -1.653 0.09828 4.202e-05
132 12 rs7132840 0 T ADDxPRS 4862 1.144 1.649 0.09924 1.082e-05
129 12 rs11178531 0 A ADDxPRS 4862 1.138 1.588 0.1122 1.397e-05
69 6 rs10806665 0 A ADDxPRS 4862 1.219 1.402 0.1608 1.27e-05
138 12 rs10506626 0 A ADDxPRS 4862 1.11 1.312 0.1894 1.571e-05
165 15 rs2930291 0 A ADDxPRS 4862 0.8951 -1.301 0.1934 6.33e-06
144 12 rs11178648 0 T ADDxPRS 4862 1.107 1.281 0.2001 3.046e-05
87 10 rs7923866 0 T ADDxPRS 4862 1.112 1.262 0.2071 3.706e-05
141 12 rs2270584 0 A ADDxPRS 4862 1.105 1.258 0.2084 1.657e-05
9 2 rs12692592 0 G ADDxPRS 4862 1.134 1.253 0.2102 1.319e-05
27 2 rs11693602 0 C ADDxPRS 4862 1.117 1.086 0.2776 4.573e-06
15 2 rs7593730 0 T ADDxPRS 4862 1.115 1.064 0.2873 8.653e-06
177 16 rs11075123 0 A ADDxPRS 4862 0.9106 -1.034 0.3012 2.194e-05
12 2 rs4077463 0 A ADDxPRS 4862 1.107 0.996 0.3192 8.58e-06
33 2 rs11688935 0 G ADDxPRS 4862 0.923 -0.9303 0.3522 2.203e-05
90 10 rs7917983 0 C ADDxPRS 4862 0.9269 -0.9297 0.3525 7.62e-08
45 3 rs440646 0 G ADDxPRS 4862 0.9279 -0.8989 0.3687 5.313e-05
39 2 rs17248501 0 C ADDxPRS 4862 1.077 0.8897 0.3736 7.597e-06
81 10 rs5015480 0 T ADDxPRS 4862 1.074 0.8671 0.3859 3.048e-05
36 2 rs10931347 0 A ADDxPRS 4862 0.9281 -0.8641 0.3875 3.238e-05
24 2 rs6718526 0 T ADDxPRS 4862 1.095 0.8518 0.3943 2.33e-06
150 12 rs7972188 0 C ADDxPRS 4862 0.9402 -0.7381 0.4605 8.911e-06
204 16 rs9930506 0 G ADDxPRS 4862 0.9435 -0.7223 0.4701 1.374e-06
30 2 rs10929982 0 C ADDxPRS 4862 1.078 0.7044 0.4812 7.735e-06
51 6 rs10946398 0 C ADDxPRS 4862 1.056 0.6569 0.5112 3.789e-05
57 6 rs9460546 0 G ADDxPRS 4862 1.056 0.6569 0.5112 3.789e-05
6 1 rs6691406 0 A ADDxPRS 4862 0.9408 -0.6524 0.5141 5.172e-05
99 10 rs7901695 0 C ADDxPRS 4862 0.9468 -0.6479 0.517 4.333e-12
48 3 rs3846119 0 T ADDxPRS 4862 1.117 0.6383 0.5233 4.773e-05
93 10 rs7901275 0 C ADDxPRS 4862 0.9503 -0.6244 0.5323 1.719e-07
60 6 rs9465871 0 C ADDxPRS 4862 1.059 0.5738 0.5661 2.525e-06
105 10 rs4132670 0 A ADDxPRS 4862 0.9548 -0.5489 0.5831 6.163e-12
111 10 rs12243326 0 C ADDxPRS 4862 0.9558 -0.5314 0.5951 5.193e-10
153 12 rs1510937 0 C ADDxPRS 4862 0.9604 -0.4955 0.6203 3.541e-06
63 6 rs7767391 0 C ADDxPRS 4862 1.05 0.487 0.6263 7.421e-06
120 10 rs10885409 0 C ADDxPRS 4862 1.037 0.4449 0.6564 2.005e-10
96 10 rs4074720 0 T ADDxPRS 4862 0.9679 -0.4019 0.6878 1.507e-10
174 16 rs2099106 0 T ADDxPRS 4862 0.9651 -0.401 0.6884 1.559e-05
123 10 rs11196208 0 C ADDxPRS 4862 1.033 0.4003 0.6889 1.363e-10
159 12 rs7961581 0 C ADDxPRS 4862 1.032 0.3655 0.7148 4.685e-06
189 16 rs17817288 0 A ADDxPRS 4862 0.9755 -0.3049 0.7605 7.222e-06
3 1 rs4655595 0 G ADDxPRS 4862 0.9626 -0.2819 0.778 5.05e-06
195 16 rs7193144 0 C ADDxPRS 4862 1.019 0.2326 0.8161 3.701e-08
108 10 rs10787472 0 C ADDxPRS 4862 0.9824 -0.2176 0.8277 7.542e-11
198 16 rs8050136 0 A ADDxPRS 4862 1.017 0.2086 0.8347 3.236e-08
114 10 rs7077039 0 C ADDxPRS 4862 1.017 0.2021 0.8398 5.112e-12
162 14 rs8012854 0 G ADDxPRS 4862 0.9866 -0.1278 0.8983 3.976e-05
168 15 rs2903265 0 A ADDxPRS 4862 0.9902 -0.108 0.914 1.058e-05
192 16 rs1121980 0 A ADDxPRS 4862 0.994 -0.07421 0.9408 4.109e-07
180 16 rs9939973 0 A ADDxPRS 4862 0.9953 -0.05807 0.9537 2.906e-07
183 16 rs9940128 0 A ADDxPRS 4862 0.9953 -0.05807 0.9537 2.906e-07